PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026210m
Common NameCISIN_1g026210mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 242aa    MW: 26557.4 Da    PI: 10.2439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026210mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-066587123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  orange1.1g026210m 65 FVCEICNKGFQRDQNLQLHRRGH 87
                       89*******************88 PP

2zf-C2H218.45.9e-06141163123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k +  +s+ k H++t+
  orange1.1g026210m 141 YKCERCSKKYAVQSDWKAHMKTC 163
                        9********************98 PP

3zf-C2H210.70.0016171189523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg+ Fsr++++ +H   +
  orange1.1g026210m 171 DCGTIFSRRDSFITHRAFC 189
                        8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.67E-96487No hitNo description
Gene3DG3DSA:3.30.160.606.5E-66487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
PfamPF121713.2E-56587IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035594106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-6129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.67E-9136162No hitNo description
PROSITE profilePS501578.517141169IPR007087Zinc finger, C2H2
SMARTSM0035543141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTEIVNSSAM TVASATGEAS VSSPGSQIQV IPPTQKKKRN LPGMPDPDSE VIALSPKTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE VRKKVYVCPE STCVHHNPAR  120
ALGDLTGIKK HFSRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYKC DCGTIFSRRD  180
SFITHRAFCD ALAEESARTR TPAIEGNPNA KTVVSSPPPP PLTPSTGVVS PGLSIQSSGT  240
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KLKQRNSKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473474.11e-179PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-117IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A067H9P50.0A0A067H9P5_CITSI; Uncharacterized protein
TrEMBLV4T4W21e-178V4T4W2_9R
STRINGPOPTR_0014s17900.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-117C2H2-like zinc finger protein